PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497540.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 178aa    MW: 19951.1 Da    PI: 7.9164
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497540.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.31.5e-111864450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    e++    +tf+k ++ i+ KA+ELS+ ++aev +++f ++ k y+y 
  XP_016497540.1 18 ESTVECLTTFAKTKAIIFIKAHELSITTGAEVGLLLFCPSEKTYTYG 64
                    6777778**************************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-9766IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.091767IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.41E-15996IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-8929IPR002100Transcription factor, MADS-box
PfamPF003196.5E-102463IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-82944IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-84465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MAKNKSLSRK KAQIKALEST VECLTTFAKT KAIIFIKAHE LSITTGAEVG LLLFCPSEKT  60
YTYGSPRNFD AIADKFLNLK LNDGKNNYSD IVESNCNKEF ERLIVQKAKL EKLLDIIQEI  120
LNLSTSPNFV ALRPSSSEES CVMNDLNVVA NADGGILLQL INWRPLSVVT REEFIQFF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497540.11e-128PREDICTED: agamous-like MADS-box protein AGL104
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14083711
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.11e-12AGAMOUS-like 91